VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL
نویسندگان
چکیده
UNLABELLED The program varsplic.pl uses information present in the SWISS-PROT and TrEMBL databases to create new records for alternatively spliced isoforms. These new records can be used in similarity searches. AVAILABILITY The program is available at ftp://ftp.ebi.ac.uk/pub/software/swissprot/, together with regularly updated output files. CONTACT [email protected]
منابع مشابه
Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL
SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation, a minimal level of redundancy and high level of integration with other databases. Ongoing genome sequencing projects have dramatically increased the number of protein sequences to be incorporated into SWISS-PROT. Since we do not want to dilute the quality standards of SWISS-PROT by incorporati...
متن کاملThe SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases. Recent developments of the database include format and content enhancements, cross-r...
متن کاملThe SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases. Recent developments of the database include: cross-references to additional databases...
متن کاملThe SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998
SWISS-PROT (http://www.expasy.ch/) is a curated protein sequence database which strives to provide a high level of annotations (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases. Recent developments of the database include: an increase in...
متن کاملSeq2Struct: a resource for establishing sequence-structure links
UNLABELLED Several methods for establishing cross-links between Protein Data Bank (PDB) structures or Structural Classification of Proteins (SCOP) domains and Swiss-Prot + TrEMBL sequences (or vice versa) rely on database annotations. Alternatively, sequence alignment procedures can be used. In this study, we describe Seq2Struct, a web resource for the identification of sequence-structure links...
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ورودعنوان ژورنال:
- Bioinformatics
دوره 16 11 شماره
صفحات -
تاریخ انتشار 2000